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Reproducible Research Papers

All Reproducible Research References

Title Author Journal Link for DOI Link for Open Access
Science and Its Skeptics Marcus, Gary The New Yorker   http://www.newyorker.com/online/blogs/elements/2013/11/science-and-its-skeptics.html
Unreliable research: Trouble at the lab   The Economist   http://www.economist.com/news/briefing/21588057-scientists-think-science-self-correcting-alarming-degree-it-not-trouble?
Simply Statistics Roger Peng Simply Statistics   http://simplystatistics.org/
https://groups.google.com/forum/#!forum/reproducible-research
Implementing Evidence-based Data Analysis: Treading a New Path for Reproducible Research (Part 3) Roger Peng Simply Statistics   (http://simplystatistics.org/2013/09/05/implementing-evidence-based-data-analysis-treading-a-new-path-for-reproducible-research-part-3/)
Evidence-based Data Analysis: Treading a New Path for Reproducible Research (Part 2) Roger Peng Simply Statistics   (http://simplystatistics.org/2013/08/28/evidence-based-data-analysis-treading-a-new-path-for-reproducible-research-part-2/)
Treading a New Path for Reproducible Research: Part 1 Roger Peng Simply Statistics   (http://simplystatistics.org/2013/08/21/treading-a-new-path-for-reproducible-research-part-1/)
After Three Months I Cannot Reproduce My Own Book Yihui Xie R-bloggers   (http://www.r-bloggers.com/after-three-months-i-cannot-reproduce-my-own-book/)
Pharma Blasts EMA Draft Policy On Disclosing Clinical Trial Data, via Pharmalot Ed Silverman Pharmalot   Pharma Blasts EMA Draft Policy On Disclosing Clinical Trial Data, via Pharmalot:
Statistical Analyses and Reproducible Research Gentleman, R, Lang, DT Bioconductor Project Working Papers   All Bioconductor Papers

Statistical Analysis and Reproducible Research

Enhanced Dynamic Documents for Reproducible Research Deborah Nolan, Roger D. Peng, Duncan Temple Lang     https://www.ctspedia.org/wiki/pub/CTSpedia/ReproducibleResearchPapers/DynWord_1.pdf
Do Pressures to Publish Increase Scientists’ Bias? An Empirical Support from US States Data Fanelli, D PLoS ONE   http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010271
Believe it or not: how much can we rely on published data on potential drug targets? Prinz, F., Schlange, T. & Asadullah, K. Nature Rev. Drug Discov. http://dx.doi.org/10.1038/nrd3439-c1  
Drug development and clinical trials —the path to an approved cancer drug Rubin, E. H. & Gilliland, D. G. Nature Rev. Clin. Oncol. http://dx.doi.org/10.1038/nrclinonc.2012.22  
Raising the bar for cancer therapy models Francia, G. & Kerbel, R. S. Nature Biotechnol http://dx.doi.org/10.1038/nbt0610-561  
High drug attrition rates—where are we going wrong? Hutchinson, L. & Kirk, R. Nature Rev. Clin Oncol. http://dx.doi.org/10.1038/nrclinonc.2011.34  
Raise standards for preclinical cancer research Begley, CG, Ellis, L Nature http://dx.doi.org/10.1038/483531a  
Why Most Published Research Findings Are False Ioannidis, J. P. PLoS Med   http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182327/pdf/pmed.0020124.pdf
Data Application and Reproducibility   Science   http://www.sciencemag.org/content/334/6060.toc
Choosing Your Workflow Applications Healy, K The Political Methodologist   Workflow paper
Source documents for paper
Reproducible Research Baggerly, KA, Berry, DA Amstat News   http://magazine.amstat.org/blog/2011/01/01/scipolicyjan11/
The Truth Wears Off Lehrer, J The New Yorker   http://www.newyorker.com/reporting/2010/12/13/101213fa_fact_lehrer
Repeatability of published microarray gene expression analyses Ioannidis, J. P., Allison, D. B., Ball, C. A., Coulibaly, I., Cui, X., Culhane, A. C., Falchi, M., Furlanello, C.. Game, L., Jurman, G., Mangion, J., Mehta, T., Nitzberg, M., Page, G. P., Petretto, E., van Noort, V Nat Genet http://dx.doi.org/10.1038/ng.295  
Reversals of established medical practices: evidence to abandon ship Prasad, V., Cifu, A., Ioannidis, J. P JAMA http://dx.doi.org/10.1001/jama.2011.1960  
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Topic revision: r13 - 11 Nov 2013 - 11:34:38 - MaryBanach
 

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